STRINGSTRING
Phatr47227 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr47227" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr47227Predicted protein (411 aa)    
Predicted Functional Partners:
Phatr48547
Predicted protein (728 aa)
       
      0.547
Phatr47936
Predicted protein (2798 aa)
       
      0.547
Phatr44534
Predicted protein (417 aa)
       
      0.547
Phatr17936
Predicted protein (206 aa)
       
      0.547
Phatr14572
Predicted protein (219 aa)
       
      0.547
Phatr10566
Predicted protein (93 aa)
       
      0.547
Phatr47120
Predicted protein (748 aa)
       
      0.477
Phatr16162
Predicted protein (284 aa)
       
      0.477
Phatr11850
Predicted protein (285 aa)
       
      0.477
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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