STRINGSTRING
Phatr47270 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr47270" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr47270Predicted protein (897 aa)    
Predicted Functional Partners:
Phatr47010
Predicted protein (1133 aa)
     
  0.956
Phatr48220
Predicted protein (1041 aa)
     
  0.928
Phatr13396
Predicted protein (680 aa)
     
0.912
Sec13
Predicted protein (330 aa)
     
  0.867
Sar1a
Predicted protein (192 aa)
     
  0.749
Sar1B
Predicted protein (174 aa)
     
  0.749
Phatr50387
Predicted protein (393 aa)
     
  0.680
COPgamma
Coatomer subunit gamma; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins (910 aa)
     
   
  0.664
Sec61alpha
Transport protein Sec61 alpha subunit (472 aa)
     
   
  0.591
SybE
Predicted protein (227 aa)
     
  0.588
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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