STRINGSTRING
Phatr47390 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr47390" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr47390Predicted protein (668 aa)    
Predicted Functional Partners:
Phatr30638
Predicted protein (294 aa)
     
  0.950
Phatr44790
Predicted protein (586 aa)
     
  0.946
Phatr49836
Predicted protein (667 aa)
     
  0.940
Phatr13741
Predicted protein (147 aa)
     
  0.914
Phatr47282
Predicted protein (610 aa)
         
    0.900
Phatr45509
Predicted protein (723 aa)
   
 
    0.584
Phatr52551
Predicted protein (600 aa)
     
 
  0.513
Phatr15692
Predicted protein (109 aa)
       
      0.506
DPM1
Dolichyl-phosphate mannosyltransferase (236 aa)
   
 
  0.483
GWT1
Predicted protein (445 aa)
     
 
  0.453
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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