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STRINGSTRING
Phatr47393 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr47393" - Nuclear pore protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr47393Nuclear pore protein (829 aa)    
Predicted Functional Partners:
Phatr50425
Predicted protein (509 aa)
     
 
  0.994
Phatr35311
Predicted protein (1849 aa)
     
 
  0.985
Phatr48647
Predicted protein (636 aa)
     
 
  0.958
Phatr46440
Predicted protein (1030 aa)
     
 
  0.950
Phatr24439
Predicted protein (357 aa)
     
 
  0.935
Phatr45854
Predicted protein (1689 aa)
     
 
  0.921
Phatr43774
Predicted protein (406 aa)
     
 
  0.921
Sec13
Predicted protein; Belongs to the WD repeat SEC13 family (330 aa)
     
   
  0.910
Phatr42712
Predicted protein (219 aa)
     
 
  0.887
Phatr29967
Predicted protein (871 aa)
     
 
  0.867
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum
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