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Phatr47417 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr47417" - DNA topoisomerase in Phaeodactylum tricornutum
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
Phatr47417DNA topoisomerase; Introduces a single-strand break via transesterification at a target site in duplex DNA. Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5’-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3’-OH DNA strand (1009 aa)    
Predicted Functional Partners:
Phatr9529
Predicted protein (348 aa)
   
  0.862
Phatr47369
Predicted protein (1496 aa)
   
  0.862
PHATR_2089
Predicted protein (449 aa)
   
  0.862
Phatr18280
Predicted protein (504 aa)
   
  0.862
Phatr14845
Predicted protein (440 aa)
   
  0.862
Phatr8810
DNA topoisomerase; Introduces a single-strand break via transesterification at a target site in duplex DNA. Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5’-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3’-OH DNA strand (868 aa)
   
   
0.834
Rad22
Predicted protein (468 aa)
     
  0.807
RFC4
Predicted protein (350 aa)
 
  0.723
Phatr49572
Predicted protein (975 aa)
     
 
  0.719
Phatr14180
Predicted protein (545 aa)
     
 
  0.719
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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