STRINGSTRING
Phatr47425 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr47425" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr47425Predicted protein (394 aa)    
Predicted Functional Partners:
Phatr45548
Predicted protein (613 aa)
     
  0.950
Phatr51406
Predicted protein (297 aa)
       
  0.825
myst
Predicted protein (349 aa)
       
  0.825
Phatr6586
Predicted protein (152 aa)
       
  0.824
Phatr24019
Predicted protein (414 aa)
       
 
  0.796
Phatr13057
Predicted protein (156 aa)
       
 
  0.796
Phatr45431
Predicted protein (1158 aa)
       
 
  0.666
Phatr52450
Predicted protein (154 aa)
     
 
  0.616
Phatr54067
Histone-like transcription factor (130 aa)
       
  0.592
H3-1a
Histone H3 (136 aa)
       
  0.592
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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