STRINGSTRING
Phatr47449 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr47449" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr47449Predicted protein (236 aa)    
Predicted Functional Partners:
Phatr11953
Predicted protein (89 aa)
   
  0.980
Phatr32845
Predicted protein (278 aa)
   
  0.980
Phatr11799
Predicted protein (84 aa)
   
  0.978
rpl2
Predicted protein (257 aa)
   
  0.977
Phatr48699
Predicted protein (217 aa)
   
  0.977
Phatr31919
Predicted protein (305 aa)
   
  0.976
Phatr19025
Predicted protein (205 aa)
   
  0.975
Phatr23324
Predicted protein (176 aa)
   
  0.975
rpl20
50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit (98 aa)
   
  0.974
Phatr12355
Predicted protein (128 aa)
   
  0.974
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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