STRINGSTRING
Phatr47536 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr47536" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr47536Predicted protein (278 aa)    
Predicted Functional Partners:
ACC2
Biotin carboxylase (2282 aa)
   
   
  0.789
FABB
3-oxoacyl-[acyl-carrier-protein] synthase (427 aa)
   
 
  0.693
FABFa
3-oxoacyl-[acyl-carrier-protein] synthase (433 aa)
   
 
  0.693
FABFb
3-oxoacyl-[acyl-carrier-protein] synthase (457 aa)
   
 
  0.693
TPI/GapC3
Triosephosphate isomerase/glyceraldehyde-3-phosphate dehydrogenase (614 aa)
   
   
  0.684
ACC1
Acetyl-coa carboxylase (2092 aa)
   
   
  0.649
FABD
Malonyl-CoA-ACP transacylase (352 aa)
   
   
  0.616
FABZ
3R-hydroxyacyl-[acyl carrier protein] dehydrase (197 aa)
   
   
  0.610
FABZ_2
3R-hydroxyacyl-[acyl carrier protein] dehydrase (197 aa)
   
   
  0.610
Phatr44930
Predicted protein (575 aa)
   
   
  0.463
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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