Phatr47655 protein (Phaeodactylum tricornutum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
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Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

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Score

Phatr47655

Predicted protein (185 aa)

Predicted Functional Partners:

Phatr23286

0.537

Phatr16766

0.537

Phatr12322

0.537

Phatr47067

0.407

Phatr49459

0.403

Phatr45319

0.403

Phatr44833

0.403

Phatr35766

0.403

Phatr20188

0.403

Phatr11189

0.403

Your Current Organism:

Phaeodactylum tricornutum

NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms

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structured XML interaction data, according to the 'PSI-MI' data standard

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... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
Phatr11189	Phatr47067	Predicted protein	Predicted protein	0.498
Phatr11189	Phatr47655	Predicted protein	Predicted protein	0.403
Phatr12322	Phatr16766	Predicted protein	Predicted protein	0.976
Phatr12322	Phatr47655	Predicted protein	Predicted protein	0.537
Phatr16766	Phatr12322	Predicted protein	Predicted protein	0.976
Phatr16766	Phatr23286	Predicted protein	Predicted protein	0.974
Phatr16766	Phatr47655	Predicted protein	Predicted protein	0.537
Phatr20188	Phatr47067	Predicted protein	Predicted protein	0.498
Phatr20188	Phatr47655	Predicted protein	Predicted protein	0.403
Phatr23286	Phatr16766	Predicted protein	Predicted protein	0.974
Phatr23286	Phatr47655	Predicted protein	Predicted protein	0.537
Phatr35766	Phatr44833	Predicted protein	Predicted protein	0.581
Phatr35766	Phatr47067	Predicted protein	Predicted protein	0.498
Phatr35766	Phatr47655	Predicted protein	Predicted protein	0.403
Phatr44833	Phatr35766	Predicted protein	Predicted protein	0.581
Phatr44833	Phatr47067	Predicted protein	Predicted protein	0.498
Phatr44833	Phatr47655	Predicted protein	Predicted protein	0.403
Phatr45319	Phatr47067	Predicted protein	Predicted protein	0.498
Phatr45319	Phatr47655	Predicted protein	Predicted protein	0.403
Phatr47067	Phatr11189	Predicted protein	Predicted protein	0.498

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