STRINGSTRING
Phatr47685 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr47685" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr47685Predicted protein (598 aa)    
Predicted Functional Partners:
Phatr12107
Predicted protein (460 aa)
 
 
  0.940
Phatr1690
Predicted protein (495 aa)
   
  0.796
Phatr41702
Predicted protein (671 aa)
     
 
  0.727
Phatr21868
Predicted protein (186 aa)
 
 
  0.722
GDCP
Glycine decarboxylase p-protein (1005 aa)
       
  0.697
METH
Methionine synthase (1245 aa)
       
  0.696
Phatr8717
Serine hydroxymethyltransferase; Interconversion of serine and glycine (464 aa)
   
  0.606
SHMT2
Serine hydroxymethyltransferase; Interconversion of serine and glycine (501 aa)
   
  0.606
SHMT
Serine hydroxymethyltransferase; Interconversion of serine and glycine (473 aa)
   
  0.606
Phatr2087
Thymidylate synthase (217 aa)
     
 
  0.603
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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