STRINGSTRING
Phatr47759 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr47759" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr47759Predicted protein (790 aa)    
Predicted Functional Partners:
Phatr43990
Predicted protein (313 aa)
     
  0.986
Phatr44632
Predicted protein (1440 aa)
     
  0.956
Phatr46643
Predicted protein (606 aa)
     
  0.935
Phatr48787
Predicted protein (247 aa)
         
    0.800
helicase_5
Predicted protein (428 aa)
     
  0.757
Phatr32759
Predicted protein (879 aa)
     
      0.558
Phatr17974
Predicted protein (475 aa)
       
      0.547
Phatr25743
Predicted protein (414 aa)
     
  0.519
Phatr25184
Predicted protein (623 aa)
     
  0.519
Phatr18008
Ubiquitin carboxyl-terminal hydrolase (844 aa)
       
      0.452
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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