STRINGSTRING
Phatr47790 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr47790" - Predicted protein in Phaeodactylum tricornutum
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr47790Predicted protein (254 aa)    
Predicted Functional Partners:
Phatr23472
Predicted protein (504 aa)
     
 
  0.575
Phatr3687
Predicted protein (239 aa)
     
 
  0.561
Phatr17967
Predicted protein; Methylates the 2’-O-ribose of nucleotides at positions 32 and 34 of the tRNA anticodon loop of substrate tRNAs (315 aa)
     
   
  0.543
Phatr43431
Predicted protein (471 aa)
     
 
  0.516
Phatr46712
Predicted protein; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA (276 aa)
     
 
  0.508
Phatr14138
Predicted protein (245 aa)
     
 
  0.508
Phatr48416
Predicted protein (511 aa)
     
   
  0.498
Phatr3334
Predicted protein (290 aa)
     
   
  0.498
Phatr47967
Predicted protein; Specifically methylates the N1 position of guanosine-37 in various cytoplasmic and mitochondrial tRNAs. Methylation is not dependent on the nature of the nucleoside 5’ of the target nucleoside. This is the first step in the biosynthesis of wybutosine (yW), a modified base adjacent to the anticodon of tRNAs and required for accurate decoding (587 aa)
     
   
  0.461
Phatr44373
Predicted protein; Specifically methylates the N1 position of guanosine-37 in various cytoplasmic and mitochondrial tRNAs. Methylation is not dependent on the nature of the nucleoside 5’ of the target nucleoside. This is the first step in the biosynthesis of wybutosine (yW), a modified base adjacent to the anticodon of tRNAs and required for accurate decoding (436 aa)
     
   
  0.461
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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