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STRINGSTRING
Phatr47790 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr47790" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr47790Predicted protein (254 aa)    
Predicted Functional Partners:
Phatr23472
tRNA (guanine(26)-N(2))-dimethyltransferase (504 aa)
     
 
  0.823
Phatr43431
Predicted protein (471 aa)
     
 
  0.821
Phatr17967
Putative tRNA (cytidine(32)/guanosine(34)-2’-O)-methyltransferase; Methylates the 2’-O-ribose of nucleotides at positions 32 and 34 of the tRNA anticodon loop of substrate tRNAs (315 aa)
     
   
  0.776
Phatr3687
Predicted protein (239 aa)
     
 
  0.770
Phatr9446
Predicted protein (220 aa)
     
   
  0.701
Phatr43183
Predicted protein (508 aa)
     
   
  0.692
PHATR_3578
Pseudouridine synthase (293 aa)
     
 
  0.689
Phatr16688
Predicted protein (414 aa)
     
   
  0.684
Phatr5217
Pseudouridine synthase (216 aa)
     
 
  0.681
Phatr43326
Predicted protein (349 aa)
     
 
  0.639
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum
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