STRINGSTRING
Phatr47802 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr47802" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr47802Predicted protein (600 aa)    
Predicted Functional Partners:
Phatr44529
Predicted protein (360 aa)
   
          0.514
Phatr6402
Predicted protein (170 aa)
   
          0.508
Phatr31741
Predicted protein (148 aa)
   
          0.508
Phatr11883
Predicted protein (357 aa)
   
          0.504
Phatr46071
Predicted protein (180 aa)
   
          0.493
Phatrdraft1025
Tocopherol cyclase (515 aa)
   
          0.482
Phatr37858
Predicted protein (398 aa)
   
          0.475
Phatr3296
Predicted protein (380 aa)
   
          0.465
Phatr3527
Predicted protein (233 aa)
   
          0.455
Phatr49879
Predicted protein (253 aa)
   
          0.438
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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