STRINGSTRING
Phatr47883 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr47883" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr47883Predicted protein (1054 aa)    
Predicted Functional Partners:
Phatr28723
Predicted protein (175 aa)
       
 
  0.979
Phatr41003
Predicted protein (251 aa)
       
      0.944
Phatr24408
N-acetyl transferase (198 aa)
       
 
  0.832
Phatr51345
Histone acetyltransferase (149 aa)
       
 
  0.746
Phatr14339
Annotation not available (174 aa)
       
 
  0.746
PHATR_7736
Predicted protein (122 aa)
       
      0.633
Phatr21420
Predicted protein (743 aa)
     
 
  0.575
CacyBP
Calcyclin-binding protein (272 aa)
       
      0.547
Phatr48920
Predicted protein (317 aa)
       
      0.463
Phatr11358
Predicted protein (184 aa)
           
  0.422
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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