STRINGSTRING
Phatr47886 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr47886" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr47886Predicted protein (528 aa)    
Predicted Functional Partners:
Phatr35766
Predicted protein (828 aa)
     
      0.945
Phatr19982
Predicted protein (2347 aa)
     
 
  0.917
Phatr45319
Predicted protein (1013 aa)
       
 
  0.629
Phatr49459
Predicted protein (868 aa)
       
      0.629
Phatr44833
Predicted protein (461 aa)
       
      0.629
Phatr20188
Predicted protein (693 aa)
       
      0.629
Phatr11189
Predicted protein (729 aa)
       
      0.629
Phatr45989
Predicted protein (1008 aa)
     
 
  0.619
Phatr9706
Predicted protein (169 aa)
       
      0.547
Phatr10531
Predicted protein (512 aa)
       
 
  0.419
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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