STRINGSTRING
Phatr47896 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr47896" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr47896Predicted protein (1543 aa)    
Predicted Functional Partners:
Phatr50326
Predicted protein (998 aa)
     
 
  0.964
Phatr23286
Predicted protein (274 aa)
       
 
  0.779
Phatr12322
Predicted protein (212 aa)
       
 
  0.779
Phatr43406
Predicted protein (1209 aa)
     
 
  0.778
Phatr33072
Predicted protein (872 aa)
     
 
  0.778
Phatr47412
Predicted protein (1256 aa)
     
 
  0.713
Phatr16766
Predicted protein (140 aa)
       
 
  0.705
Phatr16560
Predicted protein (269 aa)
       
 
  0.674
Phatr28694
Predicted protein (316 aa)
       
      0.661
Phatr13361
Predicted protein (389 aa)
       
 
  0.598
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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