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STRINGSTRING
Phatr47933 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr47933" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr47933Predicted protein (848 aa)    
Predicted Functional Partners:
Phatr44360
Predicted protein (416 aa)
      
 
  0.857
Phatr42799
Predicted protein (1343 aa)
      
 
  0.783
hNpl4
Predicted protein (473 aa)
      
 
  0.781
Phatr16870
3-hydroxy-3-methylglutaryl coenzyme A reductase (367 aa)
        
 
  0.750
Phatr48662
Predicted protein (998 aa)
      
 
  0.726
Phatr32877
Predicted protein (290 aa)
      
 
  0.726
UBC1
Ubiquitin-conjugating enzyme 1; Ubiquitin carrier protein; Belongs to the ubiquitin-conjugating enzyme family (197 aa)
      
 
  0.720
Phatr52346
alpha-1,2-Mannosidase; Mannosyl-oligosaccharide alpha-1,2-mannosidase; Belongs to the glycosyl hydrolase 47 family (509 aa)
      
   
  0.716
sUfd1
Predicted protein (191 aa)
      
 
  0.680
hUfd1
Predicted protein (202 aa)
      
 
  0.680
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum
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