STRINGSTRING
Phatr47962 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr47962" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr47962Predicted protein (270 aa)    
Predicted Functional Partners:
Phatr22113
Bifunctional aspartokinase (870 aa)
     
 
  0.631
Phatr8777
Predicted protein (110 aa)
     
      0.581
Phatr45356
Predicted protein (479 aa)
     
      0.538
Phatr16814
Predicted protein (662 aa)
     
      0.538
Phatr32036
Predicted protein (801 aa)
     
      0.537
Phatr47992
Predicted protein (432 aa)
       
 
  0.524
Phatr44708
Predicted protein (790 aa)
       
  0.512
Phatr42892
Predicted protein (4067 aa)
       
  0.512
Phatr30282
Predicted protein (341 aa)
       
  0.512
Phatr21660
Predicted protein (2400 aa)
       
  0.512
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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