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Phatr47967 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr47967" - Predicted protein in Phaeodactylum tricornutum
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr47967Predicted protein; Specifically methylates the N1 position of guanosine-37 in various cytoplasmic and mitochondrial tRNAs. Methylation is not dependent on the nature of the nucleoside 5’ of the target nucleoside. This is the first step in the biosynthesis of wybutosine (yW), a modified base adjacent to the anticodon of tRNAs and required for accurate decoding (587 aa)    
Predicted Functional Partners:
Phatr21682
Predicted protein (416 aa)
     
   
  0.517
Phatr48416
Predicted protein (511 aa)
   
   
  0.505
Phatr3334
Predicted protein (290 aa)
   
   
  0.505
Phatr36955
Predicted protein (132 aa)
     
 
  0.500
Phatr11462
Predicted protein (130 aa)
     
 
  0.500
Phatr3687
Predicted protein (239 aa)
     
   
  0.496
Phatr23472
Predicted protein (504 aa)
     
   
  0.496
Phatr17967
Predicted protein; Methylates the 2’-O-ribose of nucleotides at positions 32 and 34 of the tRNA anticodon loop of substrate tRNAs (315 aa)
     
   
  0.490
Phatr47790
Predicted protein (254 aa)
     
   
  0.461
Phatr16014
Predicted protein (199 aa)
     
   
  0.461
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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