• Version:
  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
Phatr47998 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr47998" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr47998Predicted protein (782 aa)    
Predicted Functional Partners:
Phatr48534
Predicted protein (1026 aa)
       
 
  0.855
Phatr10628
Serine/threonine-protein kinase PLK (575 aa)
     
   
  0.666
RPC157
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1281 aa)
           
  0.662
Phatr21929
Coatomer subunit alpha; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network (1270 aa)
     
 
  0.611
hCDK4
Predicted protein; Belongs to the protein kinase superfamily (388 aa)
           
  0.582
Phatr11633
Predicted protein (312 aa)
     
   
  0.579
Phatr48567
Predicted protein (195 aa)
           
  0.570
Phatr54869
Predicted protein (445 aa)
       
 
  0.525
Ran1
GTP-binding nuclear protein; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle (213 aa)
       
 
  0.447
Ran2
GTP-binding nuclear protein; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle (254 aa)
       
 
  0.447
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum
Server load: low (6%) [HD]