STRINGSTRING
Phatr48109 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr48109" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr48109Predicted protein (857 aa)    
Predicted Functional Partners:
H2A-m1
Histone H2A (138 aa)
       
  0.589
H2B-1a
Histone H2B; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling (116 aa)
       
    0.515
Phatr11823
Histone H2B (116 aa)
       
    0.515
Phatr42595
Predicted protein (476 aa)
     
 
  0.497
H3-1a
Histone H3 (136 aa)
       
  0.402
Phatr50695
Histone H3 (136 aa)
       
  0.402
H3.3
Histone H3 (136 aa)
       
  0.402
Phatr16843
Histone H3 (104 aa)
       
  0.402
Phatr11841
Histone H3 (136 aa)
       
  0.402
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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