STRINGSTRING
Phatr48170 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr48170" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr48170Predicted protein (335 aa)    
Predicted Functional Partners:
Phatr10539
Predicted protein (328 aa)
   
 
0.916
Phatr8996
Predicted protein (343 aa)
   
 
0.780
Phatr4129
Predicted protein (280 aa)
   
 
0.777
Phatr8934
Predicted protein (265 aa)
   
 
  0.720
Phatr13897
Predicted protein (108 aa)
   
 
  0.699
Phatr10291
Predicted protein (303 aa)
   
 
  0.675
Phatr21660
Predicted protein (2400 aa)
       
  0.656
Phatr30282
Predicted protein (341 aa)
       
  0.621
Phatr15031
Predicted protein (118 aa)
       
  0.621
Phatr21961
Predicted protein (320 aa)
   
 
0.561
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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