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STRINGSTRING
Phatr48220 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr48220" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr48220Predicted protein (1041 aa)    
Predicted Functional Partners:
Phatr47010
Predicted protein (1133 aa)
     
 
  0.991
Phatr49065
Predicted protein (2083 aa)
     
 
  0.971
Phatr47270
Predicted protein (897 aa)
     
 
  0.960
Sec23
Predicted protein (759 aa)
     
 
  0.960
Sec13
Predicted protein; Belongs to the WD repeat SEC13 family (330 aa)
     
 
  0.945
SybE
Predicted protein; Belongs to the synaptobrevin family (227 aa)
     
 
  0.910
Phatr13396
Predicted protein (680 aa)
     
 
0.903
Phatr13691
Predicted protein (121 aa)
     
 
  0.870
Sar1a
Predicted protein; Belongs to the small GTPase superfamily. SAR1 family (192 aa)
     
 
  0.826
Sar1B
Predicted protein; Belongs to the small GTPase superfamily. Arf family (174 aa)
     
 
  0.826
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum
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