STRINGSTRING
Phatr48316 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr48316" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr48316Predicted protein (314 aa)    
Predicted Functional Partners:
Phatr11799
Predicted protein (84 aa)
   
  0.890
Phatr14713
Predicted protein (137 aa)
   
  0.856
Phatr14915
Predicted protein (200 aa)
   
  0.852
Phatr25375
Predicted protein (201 aa)
   
  0.851
Phatr28359
Predicted protein (229 aa)
   
  0.843
Phatr13682
Predicted protein; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits (220 aa)
   
  0.842
rpl2
Predicted protein (257 aa)
   
  0.838
Phatr44833
Predicted protein (461 aa)
   
  0.826
Phatr11189
Predicted protein (729 aa)
   
  0.826
Phatr48699
Predicted protein (217 aa)
   
  0.824
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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