STRINGSTRING
Phatr48376 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr48376" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr48376Predicted protein (381 aa)    
Predicted Functional Partners:
Phatr21538
Predicted protein; Involved in nucleolar processing of pre-18S ribosomal RNA (256 aa)
     
 
    0.964
Phatr30960
Predicted protein (313 aa)
     
        0.932
Phatr8777
Predicted protein (110 aa)
     
      0.851
Phatr37596
Predicted protein (531 aa)
     
 
    0.845
Phatr50246
Predicted protein (823 aa)
     
 
    0.811
Phatr44687
Predicted protein (426 aa)
     
        0.802
Phatr44555
Predicted protein (743 aa)
     
        0.801
Phatr45356
Predicted protein (479 aa)
     
        0.798
Phatr32646
Predicted protein (268 aa)
     
        0.797
Phatr5424
Predicted protein (154 aa)
     
        0.747
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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