STRINGSTRING
Phatr48390 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr48390" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr48390Predicted protein (1780 aa)    
Predicted Functional Partners:
Phatr43499
Predicted protein (676 aa)
     
 
  0.623
Phatr42978
Predicted protein (632 aa)
     
      0.542
Phatr46891
Predicted protein (1007 aa)
     
 
  0.529
Phatr37861
Predicted protein (373 aa)
       
      0.489
Phatr25420
Predicted protein (228 aa)
       
      0.461
Phatr44239
Predicted protein (1180 aa)
       
 
  0.460
Phatr4700
Predicted protein (325 aa)
       
 
  0.457
Phatr47943
Predicted protein (1167 aa)
       
      0.400
Phatr44298
Predicted protein (1736 aa)
       
      0.400
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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