STRINGSTRING
Phatr48430 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr48430" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr48430Predicted protein (571 aa)    
Predicted Functional Partners:
Phatr35185
Predicted protein (448 aa)
     
  0.979
Phatr13417
Predicted protein (510 aa)
     
  0.979
Phatr36743
Predicted protein (149 aa)
         
  0.589
Phatr14032
Predicted protein (467 aa)
       
      0.547
Phatr11894
Predicted protein (209 aa)
       
      0.547
Phatr19152
Predicted protein (157 aa)
         
  0.538
Phatr46417
Predicted protein (482 aa)
       
      0.512
GAPN
Glyceraldehyde-3-phosphate dehydrogenase (588 aa)
       
      0.491
Phatr17954
Predicted protein (158 aa)
       
 
  0.461
Phatr19552
Predicted protein (529 aa)
       
 
  0.402
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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