STRINGSTRING
Phatr48534 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr48534" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr48534Predicted protein (1026 aa)    
Predicted Functional Partners:
Ran1
Predicted protein; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle (213 aa)
     
  0.969
Ran2
Predicted protein; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle (254 aa)
     
  0.969
Phatr42712
Predicted protein (219 aa)
     
  0.697
Phatr8112
Predicted protein (88 aa)
     
 
  0.569
Phatr16545
Predicted protein (167 aa)
     
 
  0.569
Phatr13445
Predicted protein (164 aa)
     
 
  0.569
Phatr11830
Predicted protein (161 aa)
     
 
  0.569
Phatr10666
Predicted protein (102 aa)
     
 
  0.569
Phatr47998
Predicted protein (782 aa)
       
 
  0.553
Phatr26387
Predicted protein (1053 aa)
     
   
  0.549
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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