STRINGSTRING
Phatr48547 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr48547" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr48547Predicted protein (728 aa)    
Predicted Functional Partners:
Phatr47936
Predicted protein (2798 aa)
     
      0.560
PHATR_5508
Predicted protein (142 aa)
       
      0.547
Phatr47227
Predicted protein (411 aa)
       
      0.547
Phatr47120
Predicted protein (748 aa)
       
      0.477
Phatr16162
Predicted protein (284 aa)
       
      0.477
Phatr11850
Predicted protein (285 aa)
       
      0.477
Phatr48920
Predicted protein (317 aa)
     
      0.471
Phatr12868
Predicted protein (121 aa)
     
 
  0.451
Phatr23920
Predicted protein (503 aa)
     
 
  0.428
Phatr16944
Predicted protein (438 aa)
     
 
  0.428
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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