STRINGSTRING
Phatr48567 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr48567" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr48567Predicted protein (195 aa)    
Predicted Functional Partners:
Phatr42274
Predicted protein (194 aa)
     
  0.986
Phatr10670
Predicted protein (152 aa)
     
  0.978
Phatr9828
Predicted protein (151 aa)
     
  0.871
Phatr9684
Predicted protein (151 aa)
     
  0.871
Phatr33914
Predicted protein (152 aa)
     
  0.863
Phatr21198
Predicted protein (205 aa)
     
  0.863
Phatr49332
Predicted protein (1779 aa)
       
 
  0.832
Rab18
Predicted protein (213 aa)
       
  0.640
Rab1b
Predicted protein (208 aa)
       
  0.640
Rab1a
Predicted protein (203 aa)
       
  0.640
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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