STRINGSTRING
Phatr48580 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr48580" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr48580Predicted protein (476 aa)    
Predicted Functional Partners:
Phatr36256
Predicted protein (401 aa)
   
  0.889
ACL
Atp-citrate synthase (1082 aa)
   
   
  0.606
Phatrdraft645
Acetyl-coenzyme A synthetase (732 aa)
   
 
  0.517
Phatr22974
Acetate-coa, ligase (675 aa)
   
 
  0.517
Phatr36257
Phosphoketolase (835 aa)
   
 
  0.447
ME1
Malic enzyme (560 aa)
       
 
  0.437
Phatr51970
Malic enzyme (555 aa)
       
 
  0.437
TPI/GapC3
Triosephosphate isomerase/glyceraldehyde-3-phosphate dehydrogenase (614 aa)
           
  0.431
Phatr17772
Predicted protein (1313 aa)
           
  0.424
METH
Methionine synthase (1245 aa)
         
  0.419
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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