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Phatr48587 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr48587" - Predicted protein in Phaeodactylum tricornutum
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr48587Predicted protein; Phosphodiesterase responsible for the U6 snRNA 3’ end processing. Acts as an exoribonuclease (RNase) responsible for trimming the poly(U) tract of the last nucleotides in the pre-U6 snRNA molecule, leading to the formation of mature U6 snRNA (300 aa)    
Predicted Functional Partners:
Phatr46764
Predicted protein (683 aa)
       
      0.547
Phatr44735
Predicted protein (458 aa)
       
      0.547
Phatr44516
Predicted protein (208 aa)
       
      0.547
Phatr20135
Predicted protein (690 aa)
       
      0.547
Phatr18217
Predicted protein (326 aa)
       
      0.547
Phatr13053
Predicted protein (725 aa)
       
      0.547
Phatr12309
Predicted protein (134 aa)
       
      0.547
Phatr41210
Predicted protein (235 aa)
       
      0.491
Phatr34280
Predicted protein (238 aa)
       
      0.452
Phatr26061
Predicted protein (552 aa)
       
      0.451
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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