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STRINGSTRING
Phatr48625 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr48625" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr48625Predicted protein (666 aa)    
Predicted Functional Partners:
Phatr47067
Predicted protein (1237 aa)
   
 
  0.998
Phatr1840
Predicted protein (503 aa)
   
 
  0.770
Phatr17772
Predicted protein (1313 aa)
   
 
  0.758
Phatr18087
Adenylosuccinate lyase; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily (499 aa)
   
 
  0.738
Phatr25204
Predicted protein (598 aa)
   
 
  0.694
Phatr18080
Predicted protein; Phosphoribosylaminoimidazole-succinocarboxamide synthase (268 aa)
   
 
  0.694
Phatr1690
Predicted protein (495 aa)
   
 
  0.634
Phatr27735
Predicted protein (538 aa)
   
   
  0.627
Phatr26256
Adenylosuccinate synthetase; Plays an important role in the de novo pathway and in the salvage pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP (By similarity); Belongs to the adenylosuccinate synthetase family (526 aa)
   
 
  0.612
Phatr20547
Homeobox protein (646 aa)
   
   
  0.573
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum
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