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Phatr48694 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr48694" - Homoserine dehydrogenase in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr48694Homoserine dehydrogenase (437 aa)    
Predicted Functional Partners:
Phatr49056
Predicted protein (504 aa)
 
  0.988
Phatr35594
Predicted protein (512 aa)
   
  0.985
Phatr46461
Predicted protein (426 aa)
 
  0.950
Phatr52316
Aspartokinase (468 aa)
 
  0.937
Phatr22113
Bifunctional aspartokinase (870 aa)
   
0.896
Phatr10757
Predicted protein (345 aa)
 
  0.889
Phatr16499
Predicted protein (378 aa)
 
 
  0.730
Sec61alpha
Transport protein Sec61 alpha subunit (472 aa)
       
 
  0.696
Phatrdraft870
Predicted protein (457 aa)
     
  0.679
Phatrdraft475
Predicted protein (464 aa)
     
  0.679
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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