STRINGSTRING
Phatr48747 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr48747" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr48747Predicted protein (667 aa)    
Predicted Functional Partners:
Phatr23077
Predicted protein (379 aa)
       
  0.808
Phatr46372
Absent, small, or homeotic discs 2 (687 aa)
     
  0.768
Phatr16875
Predicted protein (164 aa)
     
  0.747
H3-1a
Histone H3 (136 aa)
       
  0.727
Phatr50695
Histone H3 (136 aa)
       
  0.727
H3.3
Histone H3 (136 aa)
       
  0.727
Phatr16843
Histone H3 (104 aa)
       
  0.727
Phatr11841
Histone H3 (136 aa)
       
  0.727
Phatr6915
Predicted protein (139 aa)
     
  0.720
Phatr44935
Predicted protein (2187 aa)
     
  0.720
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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