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Phatr48810 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr48810" - Ubiquitin carrier protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr48810Ubiquitin carrier protein (220 aa)    
Predicted Functional Partners:
Phatr15355
Predicted protein (528 aa)
       
  0.972
Phatr36569
Predicted protein (166 aa)
       
  0.967
CUL1_3
CULlin protein 1 (741 aa)
       
  0.967
CUL1_1
CULlin protein 3 (762 aa)
       
  0.967
UBA3
Ubiquitin-activating enzyme E1, protein 3 (462 aa)
     
  0.934
Rbx1
Predicted protein (134 aa)
     
  0.929
CUL1_2
CULlin protein 4 (821 aa)
       
  0.867
hUba1
Ubiquitin-activating enzyme E1 (1050 aa)
       
  0.836
UBA1
Ubiquitin-activating enzyme E1, protein 1 (179 aa)
       
  0.836
SAE2
Sumo-activating enzyme 2 (643 aa)
       
  0.822
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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