STRINGSTRING
Phatr48846 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr48846" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr48846Predicted protein (627 aa)    
Predicted Functional Partners:
Phatr11954
Predicted protein (149 aa)
       
  0.852
Phatr4593
Predicted protein (182 aa)
     
  0.850
Phatr19821
Predicted protein; Component of the cytosolic iron-sulfur (Fe/S) protein assembly (CIA) machinery. Required for maturation of extramitochondrial Fe-S proteins. The NUBP1-NUBP2 heterotetramer forms a Fe-S scaffold complex, mediating the de novo assembly of an Fe-S cluster and its transfer to target apoproteins (368 aa)
     
  0.850
Phatr16719
Predicted protein (182 aa)
     
  0.850
PHATR_1494
Predicted protein (438 aa)
     
  0.850
Phatr9020
Predicted protein (364 aa)
       
  0.690
Phatrdraft1610
Predicted protein (279 aa)
       
 
  0.610
Phatrdraft1259
Predicted protein (279 aa)
       
 
  0.610
Phatr7342
Predicted protein (106 aa)
       
 
  0.610
Phatr14478
Predicted protein (112 aa)
       
 
  0.610
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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