STRINGSTRING
Phatr48920 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr48920" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr48920Predicted protein (317 aa)    
Predicted Functional Partners:
Phatr19552
Predicted protein (529 aa)
   
  0.999
Phatr36743
Predicted protein (149 aa)
     
  0.995
Phatr18579
Predicted protein (510 aa)
 
  0.993
Phatr45356
Predicted protein (479 aa)
     
 
  0.992
Phatr20773
Predicted protein (484 aa)
   
 
  0.991
Phatr11965
Predicted protein (194 aa)
   
 
  0.991
Phatr42495
Predicted protein (1233 aa)
     
  0.983
Phatrdraft1637
Predicted protein (1253 aa)
     
  0.983
Phatr43576
Predicted protein (483 aa)
 
  0.983
Phatr9983
Predicted protein (123 aa)
     
  0.982
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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