STRINGSTRING
Phatr48932 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr48932" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr48932Predicted protein (721 aa)    
Predicted Functional Partners:
Phatr9984
Predicted protein (249 aa)
   
  0.804
chlM
Magnesium-protoporphyrin IX methyltransferase (258 aa)
   
  0.804
Phatr9634
Predicted protein (480 aa)
     
 
  0.779
Phatr47199
Predicted protein (323 aa)
     
  0.704
Phatr20833
Predicted protein (211 aa)
     
  0.704
Phatr38985
Predicted protein (254 aa)
     
 
  0.575
Phatr29711
Predicted protein (221 aa)
       
 
  0.555
Phatr19000
Farnesyltranstransferase (337 aa)
   
 
  0.548
Phatr16615
Predicted protein (325 aa)
   
 
  0.548
Phatr15180
Predicted protein (309 aa)
   
 
  0.548
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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