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Phatr48952 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr48952" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr48952Predicted protein (791 aa)    
Predicted Functional Partners:
Phatr26649
Predicted protein; Converts O-phosphoseryl-tRNA(Sec) to selenocysteinyl- tRNA(Sec) required for selenoprotein biosynthesis (512 aa)
     
 
  0.957
Phatr42129
Annotation not available (479 aa)
   
 
  0.944
sufS
Cysteine desulfurase for iron-sulfur cluster formation suf (496 aa)
       
  0.942
Phatr17772
Predicted protein (1313 aa)
     
  0.850
Phatr47067
Predicted protein (1237 aa)
   
 
  0.797
ACD1
Short chain acyl-coenzyme A dehydrogenase (436 aa)
     
 
  0.778
Phatr20310
Predicted protein (434 aa)
     
 
  0.778
Phatr8917
Predicted protein (572 aa)
   
 
  0.731
Phatr25204
Predicted protein (598 aa)
       
  0.606
Phatr47293
Predicted protein (580 aa)
       
    0.594
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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