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Phatr48955 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr48955" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr48955Predicted protein (1852 aa)    
Predicted Functional Partners:
RBR
Predicted protein (1198 aa)
     
  0.850
NURF-55
Chromatin assembly factor subunit c (466 aa)
     
  0.847
E2F2
Predicted protein (753 aa)
     
  0.636
E2F1
Predicted protein (394 aa)
     
  0.636
DP2
E2f-dp (182 aa)
     
  0.581
DP1
E2f-dp (182 aa)
     
  0.581
Phatr19604
Predicted protein (363 aa)
   
      0.518
Phatr10628
Predicted protein (575 aa)
     
 
    0.506
ACL
Atp-citrate synthase (1082 aa)
   
   
  0.472
Phatr32173
Predicted protein (575 aa)
       
      0.471
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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