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STRINGSTRING
Phatr48999 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr48999" - LCTP l-lactate permease in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr48999LCTP l-lactate permease (689 aa)    
Predicted Functional Partners:
Phatr50804
Glycolate oxidase (431 aa)
   
   
  0.677
GOX
Glycolate oxidase (381 aa)
   
   
  0.677
Phatr36256
Probable acetate kinase (401 aa)
   
   
  0.602
MDH
Predicted protein; Belongs to the LDH/MDH superfamily (324 aa)
   
   
  0.585
SDH2
Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial; Iron-sulfur protein (IP) subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q) (273 aa)
   
   
  0.468
Phatr14260
Predicted protein (163 aa)
         
  0.439
Phatr44822
Predicted protein (400 aa)
           
  0.414
PMI1
Mannose-6-phosphate isomerase; Belongs to the mannose-6-phosphate isomerase type 1 family (351 aa)
           
  0.412
Phatr1129
Glycerol-3-phosphate dehydrogenase; Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family (562 aa)
         
  0.401
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum
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