STRINGSTRING
Phatr49010 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr49010" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr49010Predicted protein (341 aa)    
Predicted Functional Partners:
Phatr30925
Predicted protein (601 aa)
     
 
  0.659
RPC157
DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1281 aa)
       
 
  0.614
Phatr34324
Predicted protein (330 aa)
       
 
  0.581
RNAP-II_2
DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1211 aa)
       
 
  0.523
PHATR_3578
Pseudouridine synthase (293 aa)
       
      0.491
Phatr15555
DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1706 aa)
       
 
  0.480
Phatr47116
Predicted protein (559 aa)
       
 
  0.473
Phatr23472
Predicted protein (504 aa)
       
      0.470
RNAP-II_1
Predicted protein (319 aa)
       
      0.433
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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