Phatr49040 protein (Phaeodactylum tricornutum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

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Score

Phatr49040

Predicted protein (248 aa)

Predicted Functional Partners:

Phatr16157

0.596

Phatr47297

0.582

Phatr49101

0.569

Phatr15689

0.549

Phatr1690

0.501

Phatr8185

0.483

Phatr20787

0.477

Phatr29097

0.436

Phatr6789

0.436

Phatr34582

0.431

Your Current Organism:

Phaeodactylum tricornutum

NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum

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structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
Phatr15689	Phatr1690	Predicted protein	Predicted protein	0.423
Phatr15689	Phatr20787	Predicted protein	Predicted protein; Belongs to the peptidase M16 family	0.979
Phatr15689	Phatr49040	Predicted protein	Predicted protein	0.549
Phatr15689	Phatr6789	Predicted protein	Predicted protein	0.549
Phatr16157	Phatr47297	Predicted protein	Predicted protein	0.803
Phatr16157	Phatr49040	Predicted protein	Predicted protein	0.596
Phatr16157	Phatr49101	Predicted protein	Predicted protein	0.854
Phatr16157	Phatr6789	Predicted protein	Predicted protein	0.596
Phatr1690	Phatr15689	Predicted protein	Predicted protein	0.423
Phatr1690	Phatr47297	Predicted protein	Predicted protein	0.513
Phatr1690	Phatr49040	Predicted protein	Predicted protein	0.501
Phatr1690	Phatr49101	Predicted protein	Predicted protein	0.509
Phatr1690	Phatr6789	Predicted protein	Predicted protein	0.501
Phatr20787	Phatr15689	Predicted protein; Belongs to the peptidase M16 family	Predicted protein	0.979
Phatr20787	Phatr49040	Predicted protein; Belongs to the peptidase M16 family	Predicted protein	0.477
Phatr20787	Phatr6789	Predicted protein; Belongs to the peptidase M16 family	Predicted protein	0.477
Phatr29097	Phatr47297	Predicted protein; Belongs to the universal ribosomal protein uS7 family	Predicted protein	0.892
Phatr29097	Phatr49040	Predicted protein; Belongs to the universal ribosomal protein uS7 family	Predicted protein	0.436
Phatr29097	Phatr6789	Predicted protein; Belongs to the universal ribosomal protein uS7 family	Predicted protein	0.436
Phatr29097	Phatr8185	Predicted protein; Belongs to the universal ribosomal protein uS7 family	Predicted protein	0.997

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