STRINGSTRING
Phatr49040 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr49040" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr49040Predicted protein (248 aa)    
Predicted Functional Partners:
Phatr20787
Predicted protein (473 aa)
     
      0.793
Phatr5762
Predicted protein (236 aa)
     
  0.775
Phatr12107
Predicted protein (460 aa)
         
  0.699
P5CS
Delta l-pyrroline-5-carboxylate synthetase (747 aa)
         
  0.650
Phatr18027
Predicted protein (706 aa)
         
  0.650
Phatr15689
Predicted protein (441 aa)
     
      0.635
Phatr45848
Predicted protein (276 aa)
        
 
  0.610
Phatr1690
Predicted protein (495 aa)
     
  0.609
Phatr5588
Predicted protein (156 aa)
        
  0.584
Phatr42998
Predicted protein (642 aa)
        
  0.584
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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