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Rad22 protein (Phaeodactylum tricornutum) - STRING interaction network
"Rad22" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rad22Predicted protein (468 aa)    
Predicted Functional Partners:
RPA1
Replication protein a large 70 kD subunit (606 aa)
       
  0.976
RPA2
Predicted protein (270 aa)
       
  0.926
Phatr27762
Ubiquitin carrier protein (160 aa)
       
  0.887
Phatr54612
Ercc4-like protein (736 aa)
       
  0.865
Phatr13221
Predicted protein (208 aa)
       
  0.849
XPF
Excision repair cross-complementing rodent repair deficiency, complementation group 4 (975 aa)
       
  0.845
RAD50
RAD50 recombination protein (1436 aa)
       
  0.843
Phatr9529
Predicted protein (348 aa)
       
  0.834
Phatr47369
Predicted protein (1496 aa)
       
  0.834
PHATR_2089
Predicted protein (449 aa)
       
  0.834
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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