STRINGSTRING
Phatr49112 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr49112" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr49112Predicted protein (494 aa)    
Predicted Functional Partners:
Phatr50281
Predicted protein (417 aa)
 
   
  0.855
Phatr6848
Predicted protein (125 aa)
 
 
  0.775
Phatr23168
Predicted protein (252 aa)
   
   
  0.600
Phatrdraft420
Predicted protein (290 aa)
   
 
  0.577
Phatr50056
Predicted protein (233 aa)
   
 
  0.577
Phatr46880
Predicted protein (576 aa)
   
 
  0.577
Phatr39711
Predicted protein (252 aa)
   
 
  0.577
Phatr36390
Predicted protein (243 aa)
   
 
  0.577
Phatr35579
Predicted protein (511 aa)
   
 
  0.577
Phatr26176
Predicted protein (408 aa)
   
 
  0.577
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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