STRINGSTRING
Phatr49320 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr49320" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr49320Predicted protein (302 aa)    
Predicted Functional Partners:
Phatr26061
Predicted protein (552 aa)
     
  0.975
Phatr12309
Predicted protein (134 aa)
     
  0.965
Phatrdraft1638
Predicted protein (548 aa)
     
  0.964
Phatr54743
Predicted protein (347 aa)
     
  0.963
Phatr13192
Predicted protein (74 aa)
       
  0.962
Phatr19982
Predicted protein (2347 aa)
       
  0.952
Phatr35766
Predicted protein (828 aa)
   
  0.873
Phatr52174
DNA topoisomerase 2; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double-strand breaks (1143 aa)
     
  0.791
Phatr13581
DNA topoisomerase 2; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double-strand breaks (1165 aa)
     
  0.791
Phatr12161
Predicted protein (250 aa)
   
  0.773
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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