STRINGSTRING
Phatr49372 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr49372" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr49372Predicted protein (400 aa)    
Predicted Functional Partners:
GDCP
Glycine decarboxylase p-protein (1005 aa)
       
  0.976
Phatr8717
Serine hydroxymethyltransferase; Interconversion of serine and glycine (464 aa)
       
  0.945
SHMT2
Serine hydroxymethyltransferase; Interconversion of serine and glycine (501 aa)
       
  0.945
SHMT
Serine hydroxymethyltransferase; Interconversion of serine and glycine (473 aa)
       
  0.945
Phatrdraft877
L-serine ammonia-lyase (340 aa)
   
 
  0.915
Phatr19518
Predicted protein (479 aa)
   
 
  0.915
Phatr49056
Predicted protein (504 aa)
     
  0.909
METH
Methionine synthase (1245 aa)
       
    0.582
Phatr49601
Alanine glyoxylate aminotransferase (465 aa)
   
 
  0.579
TPI/GapC3
Triosephosphate isomerase/glyceraldehyde-3-phosphate dehydrogenase (614 aa)
       
  0.578
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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