STRINGSTRING
Phatr49387 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr49387" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr49387Predicted protein (330 aa)    
Predicted Functional Partners:
Phatr45356
Predicted protein (479 aa)
     
      0.773
Phatr48920
Predicted protein (317 aa)
     
 
  0.713
Phatr18579
Predicted protein (510 aa)
     
 
  0.679
Phatr31718
Inosine-5’-monophosphate dehydrogenase (468 aa)
     
      0.662
Phatr19552
Predicted protein (529 aa)
     
 
  0.652
Phatr43105
Predicted protein (455 aa)
     
        0.648
Phatr30365
Predicted protein; Involved in the biogenesis of the 60S ribosomal subunit (677 aa)
     
        0.648
Phatr17184
Predicted protein (445 aa)
     
      0.634
Phatr49091
Predicted protein (459 aa)
       
      0.530
Phatr20773
Predicted protein (484 aa)
     
 
  0.522
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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