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STRINGSTRING
Phatr49450 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr49450" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr49450Predicted protein (342 aa)    
Predicted Functional Partners:
Phatrdraft1637
Predicted protein (1253 aa)
     
 
  0.994
Phatr15481
Predicted protein (482 aa)
     
 
  0.981
Phatr45441
KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly (379 aa)
     
 
  0.977
Phatr45871
Predicted protein (944 aa)
     
 
  0.971
Phatr11703
Predicted protein (820 aa)
     
 
  0.968
Phatr15757
Predicted protein (181 aa)
     
 
  0.968
Phatr13820
Predicted protein (282 aa)
     
 
  0.968
PHATR_1682
Anthranilate synthase. anthranilate synthetase. chorismate lyase (439 aa)
     
 
  0.965
Phatr44047
Predicted protein (463 aa)
     
 
  0.964
Phatr44242
Predicted protein (890 aa)
     
 
  0.963
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum
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