STRINGSTRING
Phatr49450 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr49450" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr49450Predicted protein (342 aa)    
Predicted Functional Partners:
Phatrdraft1637
Predicted protein (1253 aa)
     
  0.969
Phatr15481
Predicted protein (482 aa)
     
    0.897
Phatr45888
Predicted protein (590 aa)
     
    0.866
Phatr44242
Predicted protein (890 aa)
     
  0.815
Phatr13820
Predicted protein (282 aa)
     
 
    0.765
Phatr46837
Predicted protein (997 aa)
     
    0.762
Phatr48376
Predicted protein (381 aa)
     
 
    0.740
Phatr32758
Predicted protein (483 aa)
     
 
  0.727
Phatr30585
Predicted protein (942 aa)
     
 
  0.727
Phatr11703
Predicted protein (820 aa)
     
  0.699
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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